Doxygen: Remove link to md files from excluded tests\

* These files are in tests which are excluded from doxygen
* Add deprecated lists to doxygen

Signed-off-by: Nikhil Raj <nikhil.raj@arm.com>
Change-Id: I760c317b9454dd32ea924d1a1805d05919ead9b1
diff --git a/docs/Doxyfile b/docs/Doxyfile
index 98b2e1d..9e8a434 100644
--- a/docs/Doxyfile
+++ b/docs/Doxyfile
@@ -55,7 +55,7 @@
 # title of most generated pages and in a few other places.
 # The default value is: My Project.
 
-PROJECT_NAME           = "ArmNN"
+PROJECT_NAME           = "Arm NN"
 
 # The PROJECT_NUMBER tag can be used to enter a project or revision number. This
 # could be handy for archiving the generated documentation or if some version
@@ -665,7 +665,7 @@
 # the documentation.
 # The default value is: YES.
 
-GENERATE_DEPRECATEDLIST= NO
+GENERATE_DEPRECATEDLIST= YES
 
 # The ENABLED_SECTIONS tag can be used to enable conditional documentation
 # sections, marked by \if <section_label> ... \endif and \cond <section_label>
@@ -2239,7 +2239,7 @@
 # set to NO
 # The default value is: NO.
 
-HAVE_DOT               = NO
+HAVE_DOT               = YES
 
 # The DOT_NUM_THREADS specifies the number of dot invocations doxygen is allowed
 # to run in parallel. When set to 0 doxygen will base this on the number of